erminej 2.1.20
analyze gene sets with this application.
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view: screenshot
size: 13.7 mb
license: freeware free
os: windows all
publisher: paul pavlidis
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date added: 11/09/2010
date updated: 11/09/2010
total downloads: 0
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erminej 2.1.20 publisher's description
erminej is a handy, easy to use tool designed to help you perform analysis of gene sets in expression micro-array data or other genome-wide data that results in rankings of genes. a typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. the software is designed to be used by biologists with little or no informatics background.
here are some key features of "erminej":
implementation of multiple methods for gene set analysis:
* over-representation analysis
* a resampling-based method that uses gene scores
* a rank-based method that uses gene scores
* a resampling-based method that uses correlation between gene expression profiles (a type of "cluster-enrichment" analysis).
* gene sets receive statistical scores (p-values), and multiple test correction is supported.
* support of the gene ontology terminology; users can choose which aspects to analyze.
* user files use simple text formats.
* users can modify gene sets or create new ones.
* the results can be visualized within the software.
* it is simple to compare multiple analyses of the same data set with different settings.
* user-definable hyperlinks are provided to external sites to allow more efficient browsing of the results.
* for programmers, there is a command line interface as well as a simple application programming interface that can be used to plug erminej functionality into your own code
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| antivirus information |
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downloadsky did not scan erminej for viruses, adware, spyware or other badware. for your own safety, we recommend that you always have an antivirus, with virus definitions up to date, installed on your computer when downloading and installing programs from the web.
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